Search results for "Collective motions"
showing 2 items of 2 documents
Thouless-Valatin moment of inertia and removal of the spurious mode in the linear response theory
2020
Symmetry breaking at the mean-field level leads to an appearance of a symmetry restoring Nambu-Goldstone (NG) mode in the linear response theory. These modes represent a special kind of collective motion of the system. However, they can interfere with the calculated intrinsic physical excitations and, hence, they are often called as spurious modes. I discuss translational and rotational NG mode and the inertia parameter associated with these modes, by using the finite amplitude method formalism. I will also discuss how to remove spurious mode from the calculated transition strength function.
The Boson Peak of Amyloid Fibrils: Probing the Softness of Protein Aggregates by Inelastic Neutron Scattering
2014
Proteins and polypeptides are characterized by low-frequency vibrations in the terahertz regime responsible for the so-called "boson peak". The shape and position of this peak are related to the mechanical properties of peptide chains. Amyloid fibrils are ordered macromolecular assemblies, spontaneously formed in nature, characterized by unique biological and nanomechanical properties. In this work, we investigate the effects of the amyloid state and its polymorphism on the boson peak. We used inelastic neutron scattering to probe low-frequency vibrations of the glucagon polypeptide in the native state and in two different amyloid morphologies in both dry and hydrated sample states. The dat…